OraFabric Medical Ontology Knowledge Base

Connect Remote server

claude mcp add --transport http medical-ontology https://orafabric.com/api/dev/mcp --header "Authorization: Bearer <YOUR_API_KEY>"

{
  "mcpServers": {
    "medical-ontology": {
      "url": "https://orafabric.com/api/dev/mcp",
      "headers": {
        "Authorization": "Bearer <YOUR_API_KEY>"
      }
    }
  }
}

{
  "servers": {
    "medical-ontology": {
      "type": "http",
      "url": "https://orafabric.com/api/dev/mcp",
      "headers": {
        "Authorization": "Bearer <YOUR_API_KEY>"
      }
    }
  }
}

Settings > Connectors > Add custom connector
URL: https://orafabric.com/api/dev/mcp

Replace the values in angle brackets with your own. Keys stay on your machine; we never see them.

Tools 6 found in our last check

• retrieve_evidence

  Search the whole knowledge base for a research question. Returns an evidence pack: findings, a subgraph and the papers. $0.03. The model writes the answer.

• check_relation

  Evidence for, against and null on one relationship between two named things. $0.03. A finding is returned only when one end matches the subject and the other matches the object. If a name matches several concepts, results include all of them and notices lists their ids.

• explore_concept

  What is known around one gene, drug or disease: upstream, downstream and associations. $0.03.

• get_paper

  One paper and the findings extracted from it. Does not return the article text. $0.03.

• resolve_concept

  Match a name, abbreviation or synonym to standard concepts. Free.

• get_coverage

  What the knowledge base currently covers: datasets, concepts and relationships. Free. No arguments.

Headers

Details

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