Scigantic

Connect Remote server

claude mcp add --transport http mcp https://api.scigantic.com/mcp

{
  "mcpServers": {
    "mcp": {
      "url": "https://api.scigantic.com/mcp"
    }
  }
}

{
  "servers": {
    "mcp": {
      "type": "http",
      "url": "https://api.scigantic.com/mcp"
    }
  }
}

Settings > Connectors > Add custom connector
URL: https://api.scigantic.com/mcp

Tools 16 found in our last check

• search_archives

  Search the Scigantic catalog of public scientific data archives by natural-language query. Matching considers both the archive's description AND a sample of its actual object/file names, so a distinctive filename or path pattern can surface a match even when the prose descriptio…

• get_archive

  Get full metadata for one archive by id, including its schema card (structure summary) when one exists.

• get_schema_card

  Get the compact schema card for an archive: file format, columns, sample rows/headers, sidecar docs (READMEs/data dictionaries) and a copy-paste starter cell. This is the fastest way to understand a dataset's structure without mounting it.

• get_data_access

  Get how to load a dataset in YOUR OWN environment: storage location plus copy-paste code snippets (from the dataset's schema card, or generated as a fallback). Use this after finding a dataset when you want to run analysis where you are, rather than in a hosted notebook.

• list_archive_files

  List a sample of the files/objects in an archive's storage (the cached file tree).

• get_sample_notebook

  Get the pre-executed starter notebook for an archive — a worked example of loading and exploring the data. Returns a cell-by-cell summary plus each cell's source (outputs are omitted to keep the payload small).

• lookup_paper

  Look up a research paper on arXiv, by bare arXiv id (e.g. "1706.03762") or by keywords/title, and return its metadata plus any Scigantic archives linked to or suggested by it. Useful for going from a paper an agent is reading to the underlying datasets. Lookup is arXiv-backed: D…

• list_compute_tiers

  List the compute tiers available for launching a Scigantic notebook (CPU/GPU options and hourly cost).

• search

  Search the Scigantic catalog of public scientific datasets. Returns matching datasets as {results: [{id, title, url}]}; pass an id to fetch for the full description and schema card.

• fetch

  Fetch one Scigantic dataset by id (from search): its description, storage location, source link, and schema card (format, columns, sample rows, caveats, and how to load it).

• surechembl_compound

  Look up a compound in SureChEMBL, EMBL-EBI's database of chemistry extracted from patents, by any identifier, and report its structure, properties, cross-references (ChEMBL, PubChem, DrugBank, ChEBI, PDB) and how many patents mention it.

• surechembl_patents_for_compound

  List the patents in which a compound was found (SureChEMBL). Accepts the same identifier forms as surechembl_compound. Aspirin is in ~700,000 documents, so read the total and narrow with surechembl_search_patents when it is large.

• surechembl_patent

  A patent document from SureChEMBL: title, dates, applicants, inventors, assignees, family, priority claims, number of compounds named in the text, abstract, and (optionally) the claims and description text. SureChEMBL no longer returns CPC codes, citations or legal events with a…

• surechembl_patent_chemistry

  The compounds SureChEMBL's text-mining finds named in a patent's text: SCHEMBL id, name, SMILES, InChIKey, formula, weight. Structures that appear only in images or MOL attachments are not included.

• surechembl_search_patents

  Full-text patent search over SureChEMBL with Solr syntax. Plain terms search all text; field prefixes narrow: ttl (title), ab (abstract), clm (claims), desc, asg (assignee), inv (inventor), pdyear, cpc, ic (IPCR), fam (family id). Quote publication numbers: pn:"US-10000000-B2".…

• surechembl_structure_search

  Search SureChEMBL's 31 million patent compounds by chemical structure.

Details

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