Antimicrobial resistance genes, sequences and literature from NCBI and UniProt
Connect Runs on your machine
claude mcp add amr-mcp -e NCBI_API_KEY=<NCBI_API_KEY> -e NCBI_EMAIL=<NCBI_EMAIL> -- uvx amr-mcp==0.1.4
{
"mcpServers": {
"amr-mcp": {
"command": "uvx",
"args": [
"amr-mcp==0.1.4"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"NCBI_EMAIL": "<NCBI_EMAIL>"
}
}
}
}
{
"mcpServers": {
"amr-mcp": {
"command": "uvx",
"args": [
"amr-mcp==0.1.4"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"NCBI_EMAIL": "<NCBI_EMAIL>"
}
}
}
}
{
"servers": {
"amr-mcp": {
"type": "stdio",
"command": "uvx",
"args": [
"amr-mcp==0.1.4"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"NCBI_EMAIL": "<NCBI_EMAIL>"
}
}
}
}
Replace the values in angle brackets with your own. Keys stay on your machine; we never see them.
Tools
This server runs locally, so its tools are listed by your MCP client once it starts.
Environment variables
| Name | Description |
|---|---|
NCBI_API_KEYOptional, secret | Optional free NCBI API key; raises the rate limit from 3 to 10 requests/s |
NCBI_EMAILOptional | Optional contact e-mail sent to NCBI with each request |
Details
| Package | [email protected] (PYPI, stdio) |
| First published | 6 Nov 2026 |
| Last updated | 6 Nov 2026 |
| Registry name | io.github.pabloestepaa/amr-mcp |
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