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AMR (antimicrobial resistance)

io.github.pabloestepaa/amr-mcp · v0.1.4

Antimicrobial resistance genes, sequences and literature from NCBI and UniProt

Connect Runs on your machine

Terminal
claude mcp add amr-mcp -e NCBI_API_KEY=<NCBI_API_KEY> -e NCBI_EMAIL=<NCBI_EMAIL> -- uvx amr-mcp==0.1.4
claude_desktop_config.json
{
  "mcpServers": {
    "amr-mcp": {
      "command": "uvx",
      "args": [
        "amr-mcp==0.1.4"
      ],
      "env": {
        "NCBI_API_KEY": "<NCBI_API_KEY>",
        "NCBI_EMAIL": "<NCBI_EMAIL>"
      }
    }
  }
}
~/.cursor/mcp.json
{
  "mcpServers": {
    "amr-mcp": {
      "command": "uvx",
      "args": [
        "amr-mcp==0.1.4"
      ],
      "env": {
        "NCBI_API_KEY": "<NCBI_API_KEY>",
        "NCBI_EMAIL": "<NCBI_EMAIL>"
      }
    }
  }
}
.vscode/mcp.json
{
  "servers": {
    "amr-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "amr-mcp==0.1.4"
      ],
      "env": {
        "NCBI_API_KEY": "<NCBI_API_KEY>",
        "NCBI_EMAIL": "<NCBI_EMAIL>"
      }
    }
  }
}

Replace the values in angle brackets with your own. Keys stay on your machine; we never see them.

Tools

This server runs locally, so its tools are listed by your MCP client once it starts.

Environment variables

NameDescription
NCBI_API_KEY
Optional, secret
Optional free NCBI API key; raises the rate limit from 3 to 10 requests/s
NCBI_EMAIL
Optional
Optional contact e-mail sent to NCBI with each request

Details

Package[email protected] (PYPI, stdio)
First published6 Nov 2026
Last updated6 Nov 2026
Registry nameio.github.pabloestepaa/amr-mcp

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